Calculating the similarity scores
calc_sim_score
Extract the cluster information of
cluster_info
cluster_info,NFP-method
cluster_info-methods
Group information of
group
group,NFPRefnet-method
group-methods
Install NFP data package NFPdata
install_data_package
Human KEGG signal pathway maps
kegg_refnet
Load the the reference molecular networks
load_KEGG_refnet
Basic networks of
net
net,NFPRefnet-method
net-methods
NFP-class
The NFP package
NFP
NFP-package
NFPRefnet-class
Extract the randomized similarity score
perm_score
perm_score,NFP-method
perm_score-methods
Plot NFP results
plot_NFP
plot_NFP,NFP-method
plot_NFP-methods
Plot multiple NFPs.
plot_NFPlist
Names of basic networks
refnet_name
refnet_name,NFPRefnet-method
refnet_name-methods
Show an Object
show,NFPRefnet-method
show_NFPRefnet
show_NFPRefnet-methods
The show generic function
show
show,NFP-method
show-methods
subset of NFP object
sub_NFP
sub_NFP,NFP-method
sub_NFP-methods
Subset the basic networks
subnet
subnet,NFPRefnet-method
subnet-methods