This function was used to calculate the similarity scores
between a network and the reference network.
calc_sim_score(net, NFPnet, nperm = 100, ...)
Arguments
- net,
- a graphNel object to represent the query biological networks,
for more details see
graphNEL
- NFPnet,
- a NFPRefnet object, one or more kegg pathway map, or
customized networks. For more details see
NFPRefnet-class.
- nperm,
- number of random networks for similarity score standardization
- ...,
- arguments passed to apcluster
Value
a similarity scoring vector,length is the same as the number of
networks
See also
NFPRefnet-class.