postHocTest plot

Visualize the result of post-hoc test using ggplot2

plot_postHocTest(pht, feature, step_increase = 0.12)

Arguments

pht

a postHocTest object

feature

character, to plot the post-toc test result of this feature

step_increase

numeric vector with the increase in fraction of total height for every additional comparison to minimize overlap, default 0.12.

Value

a ggplot object

Examples

data(enterotypes_arumugam)
ps <- phyloseq::subset_samples(
    enterotypes_arumugam,
    Enterotype %in% c("Enterotype 3", "Enterotype 2", "Enterotype 1")
) %>%
    phyloseq::subset_taxa(Phylum == "Bacteroidetes")
pht <- run_posthoc_test(ps, group = "Enterotype")
plot_postHocTest(pht, feature = "p__Bacteroidetes|g__Alistipes")