Convert phyloseq data to edgeR DGEList object — phyloseq2edgeR • microbiomeMarker

This function convert phyloseq::phyloseq object to edgeR::DGEList object, can then can be used to perform differential analysis using the methods in edgeR.

phyloseq2edgeR(ps, ...)

Arguments

ps: a phyloseq::phyloseq object.
...: optional, additional named arguments passed to edgeR::DGEList(). Most users will not need to pass any additional arguments here.

Value

A edgeR::DGEList object.

Examples

data(caporaso)
dge <- phyloseq2edgeR(caporaso)