R/AllClasses.R
, R/AllGenerics.R
microbiomeMarker-class.Rd
microbiomeMarker-class
is inherited from the phyloseq::phyloseq
by adding a custom slot microbiome_marker
to save the differential analysis
results. And it provides a seamless interface with phyloseq, which makes
microbiomeMarker simple and easy to use. For more details on see the
document of phyloseq::phyloseq
.
# S4 method for microbiomeMarker
show(object)
a microbiomeMarker-class
object
a microbiomeMarker
object.
marker_table
a data.frame, a marker_table
object.
norm_method
character, method used to normalize the input phyloseq
object.
diff_method
character, method used for marker identification.